Top 10 GST Registration Mistakes (and How to Avoid Them)

When it comes to GST registration in New Zealand, I keep seeing the same mistakes, even from established businesses that have been operating for years.

Over the years, I’ve dealt with these issues countless times, across businesses of all sizes. From start-ups to seasoned operators.

Quick note: If you’d like a simple way to check where your GST setup stands while you read, grab my free GST Registration Checklist. It’ll help you review each area as we go through the most common mistakes.

In this article, I’ll share

  • What GST actually is and how it works
  • Top 10 most common GST registration mistakes
  • Why these mistakes can hurt your business
  • How to avoid each mistake.
  • My personal advice

After Years in Tax, These are the GST Registration Mistakes I see Most Often in New Zealand

What is GST?

GST stands for Goods and Services Tax, and in New Zealand it’s set at 15%. It’s a tax added to the price of most goods and services you buy or sell.

Most everyday purchases include GST in the price — but some things don’t. Common examples include:

  • Rent on the house or flat you live in (but GST applies if you rent a holiday home)
  • Airfares for overseas travel
  • Mortgage payments
  • Bank fees or charges

Businesses registered for GST collect it from their customers and pass it on to IRD, while also claiming back GST on their own expenses.

How the Mistakes Are Structured

To make it easier to follow, I’ve grouped the mistakes into three key stages of the GST journey:

  • Setup: Getting your GST registration right from the start
  • Operational: Managing your GST registration correctly day-to-day
  • Closure: Wrapping your GST registration up properly when your business stops trading


1. Not Knowing What GST Is (and Isn’t)

GST is not your income, and it’s not your expense. It’s money you’re temporarily holding on behalf of IRD.

When a buyer pays GST to a seller, the seller simply collects it and passes it on to IRD. In a sense, you’re working for IRD as an unofficial agent every time you charge GST.

Confusing GST with business income often leads to cashflow problems. Business owners spend GST they should have set aside for IRD.

Tip: Keep a separate GST bank account. Every time you collect GST, move it there. You’ll never scramble for cash at filing time.

I often hear from from start-ups thinking that they don’t need to register because their turnover is below the $60k threshold. But if your prices include GST (for example, commercial leases or taxi fares). You must register even if your income is under the threshold.

Registration is mandatory if:

  • Your annual turnover exceeds $60,000, or
  • If your prices include GST.

Failing to register when required can lead to back-dated GST liabilities, penalties, and interest. IRD won’t accept “I didn’t know” as an excuse.

Tip: Check your turnover regularly and review your contracts. If your invoices or prices state “including GST,” registration isn’t optional.

IRD only approves backdated GST registration in exceptional circumstances. Delays can cost you dearly.

If you make major purchases (like tools, vehicles, or equipment) before registering, you may miss out on the GST refunds on those costs if IRD doesn’t approve a backdate.

It hurts your cashflow and working capital. Late registration can permanently reduce your available input credits, and you’ll still have to pay output GST once registered.

Tip: As soon as your 12-month projected turnover approaches $60,000, apply for GST registration proactively. Don’t wait for IRD to tell you.

4. Charging and Collecting GST When you’re Not Registered

If you’re not registered for GST, you cannot charge or collect GST from your customers or include it on your invoices.

This is one of the most serious mistakes in IRD’s eyes. Businesses often do this simply because they don’t fully understand how GST works.

If you’ve accidentally charged GST without being registered, speak to a tax agent immediately to correct it.

IRD treats this as false representation, and you can be required to repay the collected GST plus penalties.

Tip: Before sending your first invoice, double-check your IRD registration status and that your GST number appears correctly.


There are three ways to account for GST: payments, invoice or hybrid basis.

For most small businesses starting out, the payments basis works best because you only pay GST after receiving payment from customers. Once your annual revenue exceeds $2 million, you must move to the invoice or hybrid basis.

Choosing the wrong basis can distort cashflow. You might end up paying GST on sales you haven’t been paid for yet.

Tip: Ask your accountant to confirm which basis you’re on — and whether it still suits your business size and industry.

You can file GST monthly, two-monthly, or six-monthly.

Six-monthly sounds easier, but often leads to big debts piling up. Two-monthly filing suits most businesses. It strikes a good balance between admin and cashflow. Monthly filing works if you want to stay ultra-current (or don’t like money siting in your account owed to IRD).

The longer you wait between filings, the higher the risk of spending GST funds you don’t actually own.

Tip: If your annual turnover exceeds $500k, you can’t file six-monthly. Even if you can, think twice before doing it — shorter cycles keep you disciplined.

If you file GST six-monthly, make sure your filing periods align with March and September.

If you pick random months, your GST filing periods won’t match the standard financial tax year-end, creating extra reconciliation work for your accountant and more cost to you.

Misalignment causes confusion, timing differences, and unnecessary accounting costs at year-end.

Tip: When you register or change filing frequency, request IRD to set your GST periods to March/September for smooth alignment.

As your business scales, your eligibility for filing frequency and accounting basis changes.

Once your turnover exceeds $500k, you can’t file six-monthly. Once you hit $2m, you can’t stay on the payments basis. Many established businesses forget to review these settings.

Operating on the wrong settings puts you out of compliance and may trigger IRD reviews or forced adjustments.

Tip: Add a simple reminder in your annual calendar: “GST review” every March. It takes five minutes but prevents major compliance headaches.


9. Not Deregistering When Business Stops

If you stop trading but don’t formally deregister, IRD still expects GST returns every filing cycle.

Many business owners think they can simply stop filing. IRD doesn’t see it that way.

You’ll keep receiving IRD reminders, late-filing penalties, and eventually debt collection notices for a business that no longer trades.

Tip: When closing your business, deregister for GST, and then file your final return in myIR or through your tax agent.

Even after you deregister, you must file one last GST return and make any final adjustments.

For example, if you claimed GST on a vehicle or equipment you’re keeping, you’ll need to return part of that GST to IRD.

Missing this step means your deregistration isn’t complete, and IRD can reopen your GST account later.

Tip: Treat your final GST return as a reconciliation — review all assets, inventory, and prepaid expenses to ensure they’re correctly adjusted.

My Personal Advice

I come across these GST mistakes almost every week, and it still surprises me how common they are, even among established businesses.

Don’t wait for IRD to point them out; fix them early and stay in control.

If you’d like a simple way to check where your business stands, download my free GST Registration Checklist.

It’s a quick, practical guide to help you make sure your GST setup is correct and IRD-ready, without the guesswork.